Identifying Cells and Organelles in Light and Electron Micrographs
When looking through a microscope, the key to distinguishing between an animal, a plant, and a fungal cell lies in identifying the cell’s unique features and organelles.
Recognizing Prokaryotic, Plant, and Animal Cells
- Cells fall into two broad categories: prokaryotic and eukaryotic.
- Within eukaryotic cells, plant and animal cells have distinct structural differences.
Prokaryotic Cells
- Prokaryotic cells, like bacteria, are structurally simpler than eukaryotic cells.
- To identify a prokaryotic cell, look for:
- Small size: Typically less than 5 µm in diameter.
- Cell wall: Composed of peptidoglycan, providing structural support.
- Nucleoid region: A lighter area in the cytoplasm where circular DNA is located, not enclosed by a membrane.
- No membrane-bound organelles: Prokaryotes lack organelles like a nucleus, mitochondria, or chloroplasts.
- 70S ribosomes: Smaller ribosomes compared to the 80S ribosomes of eukaryotic cells.
In an electron micrograph of Escherichia coli, you might notice a dense cytoplasm with scattered ribosomes, a nucleoid region, and a visible cell wall forming the outer boundary.
Plant Cells
- Cell wall: Made of cellulose, giving the cell rigidity and support.
- Chloroplasts: Organelles containing stacks of thylakoids (grana) where photosynthesis occurs.
- Large central vacuole: A prominent organelle used for storage and maintaining cell turgor pressure.
- Regular shape: Plant cells often appear rectangular or box-like due to the rigid cell wall.
In a light micrograph of an onion epidermis cell, you would observe a large central vacuole, a nucleus near the cell wall, and the thick cellulose cell wall outlining the cell.
Animal Cells
- No cell wall: Animal cells have a plasma membrane only, resulting in a more irregular shape.
- No chloroplasts: Animal cells do not perform photosynthesis.
- Small vacuoles: If present, they are much smaller and temporary compared to the large central vacuole in plant cells.
- Centrioles: Organelles involved in cell division, present in animal cells but absent in most plant cells.
In an electron micrograph of a liver cell, you might find mitochondria, a prominent nucleus, and small vesicles, but no cell wall or chloroplasts.
Tip- To quickly differentiate plant cells from animal cells, check for the presence of a cell wall and chloroplasts.
- These are exclusive to plant cells.
Identifying Organelles in Electron Micrographs
- Electron micrographs provide detailed images of cellular structures, enabling the identification of specific organelles.
- Below are the key organelles to recognize and their distinguishing features:
1. Nucleus
- Appearance: A large, spherical structure with a double membrane (nuclear envelope) and visible nuclear pores.
- Function: Stores genetic material (linear DNA) and controls cell activities.
- Distinction: Found only in eukaryotic cells.
2. Mitochondria
- Appearance: Oval-shaped with a double membrane; the inner membrane forms folds called cristae.
- Function: Site of aerobic respiration and ATP production.
- Distinction: Present in both plant and animal cells.
- Students often confuse mitochondria with chloroplasts.
- Remember, mitochondria have cristae, while chloroplasts contain thylakoid stacks (grana).
3. Chloroplast
- Appearance: Oval-shaped with a double membrane; contains stacks of thylakoids (grana) and a fluid-filled stroma.
- Function: Site of photosynthesis.
- Distinction: Found exclusively in plant cells.
4. Ribosomes
- Appearance: Small, dense granules in the cytoplasm or attached to the rough endoplasmic reticulum (RER).
- Function: Protein synthesis.
- Distinction: 70S ribosomes in prokaryotes; 80S ribosomes in eukaryotes.
5. Endoplasmic Reticulum
- Rough ER: Appears as a network of membranes with ribosomes attached. Involved in protein synthesis.
- Smooth ER: Lacks ribosomes and is involved in lipid synthesis and detoxification.
Identify RER by parallel cisternae with black dots (ribosomes) attached.
6. Golgi Apparatus
- Appearance: A stack of flattened, membrane-bound sacs.
- Function: Modifies, sorts, and packages proteins and lipids for transport.
- Students confuse RER with Golgi.
- Remember: RER = ribosomes attached; Golgi = curved cisternae + vesicles.
7. Vacuole
- Appearance: A large, central organelle in plant cells; smaller and temporary in animal cells.
- Function: Stores substances and maintains turgor pressure in plant cells.
8. Plasma Membrane
- Appearance: A thin, dark line enclosing the cell.
- Function: Regulates the movement of substances in and out of the cell.
9. Cell Wall
- Appearance: A thick outer layer surrounding the plasma membrane.
- Function: Provides structural support and protection.
10. Villus
- Appearance: Finger-like projections of the plasma membrane.
- Function: Increase surface area for absorption.
Stepwise Identification
- Nucleus present?
- Yes → Eukaryote
- No → Prokaryote
- Cell wall present?
- Yes + chloroplasts + vacuole → Plant
- Yes + no plastids → Fungi (not in IB syllabus here)
- No → Animal
- Vacuole size
- Large central → Plant
- Small scattered → Animal
- Specialized features
- Microvilli → absorption cell (intestine).
- Many mitochondria → high energy requirement.
- Many lysosomes → phagocytic cell (e.g., macrophage).
Key points for Interpreting Micrographs
- Identify the scale: Look for a scale bar to determine the magnification and size of structures.
- Focus on key features: Check for a cell wall, chloroplasts, or nucleus to classify the cell type.
- Examine organelles: Look for unique features such as cristae in mitochondria or grana in chloroplasts.
- Use context clues: Consider the cell’s shape, size, and arrangement to aid identification.
Prokaryotic cells are smaller and lack membrane-bound organelles, while eukaryotic cells have a nucleus and other organelles.
Self review- How can you tell the difference between a mitochondrion and a chloroplast in an electron micrograph?
- Why are free ribosomes visible as dark granules while ER membranes are light?
- What three features distinguish a plant cell from an animal cell in EM?
- Which organelle in EM contains digestive enzymes?
How has the advancement of microscopy influenced our understanding of cell structure and the diversity of life? Consider how technological progress has shaped cell theory.


